An overview of FuncNet has been included in the following review article:
ENFIN — A European network for integrative systems biology (Kahlem et al., 2009)
A FuncNet-specific paper with more technical detail and benchmarking results is under review.
Publications about the prediction methods
JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture (Sperisen & Pagni, 2005)
Gene analogue finder: a GRID solution for finding functionally analogous gene products (Tulipano et al., 2007)
PIPs: human protein–protein interaction prediction database (McDowall et al., 2009)
More to follow.
Other information
FuncNet: Integration of bioinformatics methods for high-throughput protein function prediction (initial proposal)
Prediction of new mitotic spindle proteins (Orengo, 2008, PDF presentation)
